User profiles for Michael Stumpf

Michael PH Stumpf

Professor of Theoretical Systems Biology, University of Melbourne
Verified email at unimelb.edu.au
Cited by 18422

Critical truths about power laws

MPH Stumpf, MA Porter - Science, 2012 - science.org
The ability to summarize observations using explanatory and predictive theories is the
greatest strength of modern science. A theoretical framework is perceived as particularly …

[HTML][HTML] Gene regulatory network inference from single-cell data using multivariate information measures

TE Chan, MPH Stumpf, AC Babtie - Cell systems, 2017 - cell.com
While single-cell gene expression experiments present new challenges for data processing,
the cell-to-cell variability observed also reveals statistical relationships that can be used by …

Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems

…, N Strelkowa, A Ipsen, MPH Stumpf - Journal of the …, 2009 - royalsocietypublishing.org
Approximate Bayesian computation (ABC) methods can be used to evaluate posterior
distributions without having to calculate likelihoods. In this paper, we discuss and apply an ABC …

Simulation-based model selection for dynamical systems in systems and population biology

T Toni, MPH Stumpf - Bioinformatics, 2010 - academic.oup.com
Motivation: Computer simulations have become an important tool across the biomedical
sciences and beyond. For many important problems several different models or hypotheses …

Sensitivity, robustness, and identifiability in stochastic chemical kinetics models

…, MJ Costa, DA Rand, MPH Stumpf - Proceedings of the …, 2011 - National Acad Sciences
We present a novel and simple method to numerically calculate Fisher information matrices
for stochastic chemical kinetics models. The linear noise approximation is used to derive …

[HTML][HTML] A comprehensive evaluation of nasal and bronchial cytokines and chemokines following experimental rhinovirus infection in allergic asthma: increased …

…, A Del-Rosario, J Dhariwal, PDW Kirk, MPH Stumpf… - …, 2017 - thelancet.com
Background Rhinovirus infection is a major cause of asthma exacerbations. Objectives We
studied nasal and bronchial mucosal inflammatory responses during experimental rhinovirus-…

Estimating the size of the human interactome

MPH Stumpf, T Thorne, E De Silva… - Proceedings of the …, 2008 - National Acad Sciences
After the completion of the human and other genome projects it emerged that the number of
genes in organisms as diverse as fruit flies, nematodes, and humans does not reflect our …

[HTML][HTML] Evolution of pathogenicity and sexual reproduction in eight Candida genomes

…, D Soll, R Staggs, I Stansfield, MPH Stumpf… - Nature, 2009 - nature.com
Candida species are the most common cause of opportunistic fungal infection worldwide.
Here we report the genome sequences of six Candida species and compare these and related …

Subnets of scale-free networks are not scale-free: sampling properties of networks

MPH Stumpf, C Wiuf, RM May - Proceedings of the National …, 2005 - National Acad Sciences
Most studies of networks have only looked at small subsets of the true network. Here, we
discuss the sampling properties of a network's degree distribution under the most parsimonious …

Balancing selection at the prion protein gene consistent with prehistoric kurulike epidemics

S Mead, MPH Stumpf, J Whitfield, JA Beck, M Poulter… - Science, 2003 - science.org
Kuru is an acquired prion disease largely restricted to the Fore linguistic group of the Papua
New Guinea Highlands, which was transmitted during endocannibalistic feasts. …